If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ), 'gf_id' => 'HOM05D000645', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000645' ), 'data_identifier' => 'HOM05D000645', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000645', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '883', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p11030' => 'bna', 'A03p00690' => 'bna', 'A03p00730' => 'bna', 'A03p00740' => 'bna', 'A03p14770' => 'bna', 'A03p15130' => 'bna', 'A04p28860' => 'bna', 'A06p04150' => 'bna', 'A06p35150' => 'bna', 'A07p04820' => 'bna', 'A07p21060' => 'bna', 'A09p14430' => 'bna', 'A10p10940' => 'bna', 'A10p11520' => 'bna', 'Aa31LG10G5040' => 'aar', 'Aa31LG11G3600' => 'aar', 'Aa31LG1G22370' => 'aar', 'Aa31LG2G1610' => 'aar', 'Aa31LG3G10170' => 'aar', 'Aa31LG3G9670' => 'aar', 'Aa31LG8G2700' => 'aar', 'Aa31LG9G180' => 'aar', 'Aa31sc70G100' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1211' => 'aag', 'Actinidia06133' => 'ach', 'Actinidia06645' => 'ach', 'Actinidia07977' => 'ach', 'Actinidia09988' => 'ach', 'Actinidia11831' => 'ach', 'Actinidia12131' => 'ach', 'Actinidia18665' => 'ach', 'Actinidia20255' => 'ach', 'Actinidia22191' => 'ach', 'Actinidia26463' => 'ach', 'Actinidia27298' => 'ach', 'Actinidia34238' => 'ach', 'Ah.01g013760' => 'amhyb', 'Ah.02g121960' => 'amhyb', 'Ah.03g146710' => 'amhyb', 'Ah.05g173500' => 'amhyb', 'Ah.05g179360' => 'amhyb', 'Ah.06g183860' => 'amhyb', 'Ah.07g205300' => 'amhyb', 'Ah.12g053000' => 'amhyb', 'Ah.13g070490' => 'amhyb', 'AL1G15370' => 'aly', 'AL1G43520' => 'aly', 'AL1G55660' => 'aly', 'AL2G10150' => 'aly', 'AL3G28020' => 'aly', 'AL450U10010' => 'aly', 'AL4G34590' => 'aly', 'AL4G35920' => 'aly', 'AL6G11660' => 'aly', 'AL6G35840' => 'aly', 'AL7G47170' => 'aly', 'AL8G28220' => 'aly', 'AL8G29430' => 'aly', 'AL964U10010' => 'aly', 'Aqoxy1G02578' => 'aox', 'Aqoxy3G03486' => 'aox', 'Aqoxy4G01187' => 'aox', 'Aqoxy5G02172' => 'aox', 'Aqoxy7G00047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.40ZGST' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4I5J7H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4K6020' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5FGK1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8N9YYG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9TDX6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CE1PCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DV46WW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FWV9SW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCI8A4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXB4R4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0VNL8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P83Y1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH2I0N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PIY00Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PT3XB5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1XM0F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6BA0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH0FMF' => 'arhy', 'AT1G48870' => 'ath', 'AT1G64610' => 'ath', 'AT2G37670' => 'ath', 'AT3G15470' => 'ath', 'AT5G02430' => 'ath', 'AT5G24320' => 'ath', 'AT5G42010' => 'ath', 'AT5G53500' => 'ath', 'AT5G54200' => 'ath', 'ATR0490G006' => 'atr', 'ATR0544G001' => 'atr', 'ATR0680G423' => 'atr', 'ATR0757G147' => 'atr', 'ATR0772G139' => 'atr', 'Atru.chr12.2263' => 'acertr', 'Atru.chr2.2748' => 'acertr', 'Atru.chr4.780' => 'acertr', 'Atru.chr5.706' => 'acertr', 'Atru.chr5.707' => 'acertr', 'Atru.chr8.1965' => 'acertr', 'Atru.chr8.1966' => 'acertr', 'Atru.chr9.1918' => 'acertr', 'Atru.chr9.1919' => 'acertr', 'AUR62003611' => 'cqu', 'AUR62004518' => 'cqu', 'AUR62006062' => 'cqu', 'AUR62007028' => 'cqu', 'AUR62017922' => 'cqu', 'AUR62019892' => 'cqu', 'AUR62022737' => 'cqu', 'AUR62029352' => 'cqu', 'AUR62034233' => 'cqu', 'AUR62035565' => 'cqu', 'AUR62041033' => 'cqu', 'AUR62041763' => 'cqu', 'BcaB01g04283' => 'bca', 'BcaB01g06162' => 'bca', 'BcaB02g07869' => 'bca', 'BcaB02g09132' => 'bca', 'BcaB05g22049' => 'bca', 'BcaB06g29017' => 'bca', 'BcaB06g29577' => 'bca', 'BcaB06g29580' => 'bca', 'BcaB07g31493' => 'bca', 'BcaB07g33712' => 'bca', 'BcaB08g35714' => 'bca', 'BcaB08g35775' => 'bca', 'BcaC01g06256' => 'bca', 'BcaC01g06293' => 'bca', 'BcaC02g07502' => 'bca', 'BcaC03g14411' => 'bca', 'BcaC04g20361' => 'bca', 'BcaC04g20448' => 'bca', 'BcaC04g22606' => 'bca', 'BcaC08g43083' => 'bca', 'BcaC08g44576' => 'bca', 'BcaNung01224' => 'bca', 'BcaNung05924' => 'bca', 'BcaNung07120' => 'bca', 'BolC2t06045H' => 'bol', 'BolC2t07959H' => 'bol', 'BolC3t12658H' => 'bol', 'BolC3t14139H' => 'bol', 'BolC3t14176H' => 'bol', 'BolC4t28115H' => 'bol', 'BolC6t35482H' => 'bol', 'BolC6t35543H' => 'bol', 'BolC6t37220H' => 'bol', 'BolC7t44868H' => 'bol', 'BolC9t54637H' => 'bol', 'BolC9t57216H' => 'bol', 'BolC9t57323H' => 'bol', 'BraA02t04717Z' => 'bra', 'BraA02t06168Z' => 'bra', 'BraA03t09458Z' => 'bra', 'BraA03t10769Z' => 'bra', 'BraA03t10808Z' => 'bra', 'BraA04t18360Z' => 'bra', 'BraA06t23621Z' => 'bra', 'BraA06t26435Z' => 'bra', 'BraA07t28273Z' => 'bra', 'BraA07t29793Z' => 'bra', 'BraA09t37091Z' => 'bra', 'BraA10t43185Z' => 'bra', 'BraA10t43246Z' => 'bra', 'C02p00450' => 'bna', 'C02p18230' => 'bna', 'C03p00960' => 'bna', 'C03p17630' => 'bna', 'C04p66110' => 'bna', 'C06p03440' => 'bna', 'C06p20410' => 'bna', 'C07p43420' => 'bna', 'C09p17350' => 'bna', 'C09p43340' => 'bna', 'C09p44500' => 'bna', 'CAN.G430.1' => 'can', 'CANSAT01G2823' => 'cansat', 'CANSAT21G0636' => 'cansat', 'CANSAT21G1385' => 'cansat', 'CANSAT35G0854' => 'cansat', 'CANSAT56G4354' => 'cansat', 'CARHR038860' => 'chi', 'CARHR046310' => 'chi', 'CARHR090520' => 'chi', 'CARHR131880' => 'chi', 'CARHR189130' => 'chi', 'CARHR210980' => 'chi', 'CARHR212550' => 'chi', 'CARHR266640' => 'chi', 'CARHR267420' => 'chi', 'Carub.0001s3801' => 'cru', 'Carub.0002s0013' => 'cru', 'Carub.0003s1519' => 'cru', 'Carub.0004s1961' => 'cru', 'Carub.0006s0123' => 'cru', 'Carub.0006s2214' => 'cru', 'Carub.0007s3336' => 'cru', 'Carub.0008s1367' => 'cru', 'Carub.0008s1452' => 'cru', 'Ca_01826_v3' => 'car', 'Ca_11337_v3' => 'car', 'Ca_12780_v3' => 'car', 'Ca_16728_v3' => 'car', 'Ca_16925_v3' => 'car', 'Ca_17449_v3' => 'car', 'Ca_17650_v3' => 'car', 'Ca_30023_v3' => 'car', 'CBR_g38417' => 'cbr', 'Cc02_g01240' => 'ccan', 'Cc05_g12380' => 'ccan', 'Cc07_g17860' => 'ccan', 'Cc08_g16550' => 'ccan', 'Cc09_g05820' => 'ccan', 'CDE02G4602' => 'cde', 'CDE03G0228' => 'cde', 'CDE04G1830' => 'cde', 'CDE04G3527' => 'cde', 'CDE06G0420' => 'cde', 'CDE06G0876' => 'cde', 'CDE07G1363' => 'cde', 'CDE08G0320' => 'cde', 'CDE08G0659' => 'cde', 'CDE09G0353' => 'cde', 'CDE09G1361' => 'cde', 'CDE11G0178' => 'cde', 'CDE11G0282' => 'cde', 'CDE12G0327' => 'cde', 'Cfa002835' => 'cfa', 'Cfa016206' => 'cfa', 'Cfa017390' => 'cfa', 'Cfa017393' => 'cfa', 'Cfa020544' => 'cfa', 'Cfa023731' => 'cfa', 'Ciclev10007384m.g' => 'ccl', 'Ciclev10013628m.g' => 'ccl', 'Ciclev10019098m.g' => 'ccl', 'Ciclev10019710m.g' => 'ccl', 'Ciclev10025084m.g' => 'ccl', 'CiPaw.03G127900' => 'cil', 'CiPaw.04G086100' => 'cil', 'CiPaw.05G199100' => 'cil', 'CiPaw.09G192000' => 'cil', 'CiPaw.11G115000' => 'cil', 'CiPaw.11G173500' => 'cil', 'CiPaw.12G079600' => 'cil', 'CiPaw.12G121000' => 'cil', 'ClCG01G000290' => 'cla', 'ClCG01G001640' => 'cla', 'ClCG01G015550' => 'cla', 'ClCG04G008220' => 'cla', 'ClCG11G018230' => 'cla', 'COL.COLO4_06236' => 'col', 'COL.COLO4_09439' => 'col', 'COL.COLO4_10764' => 'col', 'COL.COLO4_14002' => 'col', 'COL.COLO4_14814' => 'col', 'COL.COLO4_14815' => 'col', 'COL.COLO4_16807' => 'col', 'Cpa.g.sc15.29' => 'cpa', 'Cpa.g.sc188.16' => 'cpa', 'Cpa.g.sc3.112' => 'cpa', 'Cpa.g.sc42.111' => 'cpa', 'Cpa.g.sc80.28' => 'cpa', 'Cpa.g.sc96.58' => 'cpa', 'Cre06.g276100' => 'cre', 'CsaV3_4G024950' => 'csa', 'CsaV3_4G033890' => 'csa', 'CsaV3_5G000280' => 'csa', 'CsaV3_5G001800' => 'csa', 'CsaV3_6G041790' => 'csa', 'CSS0003166' => 'camsi', 'CSS0009625' => 'camsi', 'CSS0012977' => 'camsi', 'CSS0013389' => 'camsi', 'CSS0014205' => 'camsi', 'CSS0021807' => 'camsi', 'CSS0031633' => 'camsi', 'CSS0032660' => 'camsi', 'CSS0034984' => 'camsi', 'CSS0035174' => 'camsi', 'CSS0035932' => 'camsi', 'CSS0036699' => 'camsi', 'CSS0037027' => 'camsi', 'CSS0039219' => 'camsi', 'CSS0040811' => 'camsi', 'DCAR_001355' => 'dca', 'DCAR_006498' => 'dca', 'DCAR_008958' => 'dca', 'DCAR_009234' => 'dca', 'DCAR_020341' => 'dca', 'DCAR_020850' => 'dca', 'DCAR_020981' => 'dca', 'Dinv01540' => 'din', 'Dinv04325' => 'din', 'Dinv06366' => 'din', 'Dinv08316' => 'din', 'Dinv11328' => 'din', 'Dinv22381' => 'din', 'Dinv24317' => 'din', 'Dinv35354' => 'din', 'Dinv35611' => 'din', 'Dinv39886' => 'din', 'Duzib068G1010' => 'dzi', 'Duzib084G0231' => 'dzi', 'Duzib084G0791' => 'dzi', 'Duzib106G1515' => 'dzi', 'Duzib128G0450' => 'dzi', 'Duzib138G0076' => 'dzi', 'Duzib147G1353' => 'dzi', 'Duzib170G0782' => 'dzi', 'Duzib187G0965' => 'dzi', 'Duzib205G0898' => 'dzi', 'Duzib205G1353' => 'dzi', 'Duzib264G0878' => 'dzi', 'ECA233G4839' => 'eca', 'ECA236G3858' => 'eca', 'ECA236G3878' => 'eca', 'ECA240G4472' => 'eca', 'ECA246G1025' => 'eca', 'ECA246G4741' => 'eca', 'ECA248G0419' => 'eca', 'EL10Ac1g00235' => 'bvu', 'EL10Ac3g05243' => 'bvu', 'EL10Ac4g08117' => 'bvu', 'EL10Ac5g11573' => 'bvu', 'EL10Ac5g11577' => 'bvu', 'EL10Ac5g12469' => 'bvu', 'Eucgr.A01259' => 'egr', 'Eucgr.A01444' => 'egr', 'Eucgr.D01697' => 'egr', 'Eucgr.F01096' => 'egr', 'Eucgr.F03337' => 'egr', 'Eucgr.I00228' => 'egr', 'FAN01G0083' => 'fan', 'FAN04G0636' => 'fan', 'FAN05G5234' => 'fan', 'FAN06G0837' => 'fan', 'FAN08G2788' => 'fan', 'FAN09G2244' => 'fan', 'FAN09G4370' => 'fan', 'FAN10G3217' => 'fan', 'FAN10G3550' => 'fan', 'FAN11G2895' => 'fan', 'FAN13G1100' => 'fan', 'FAN16G0920' => 'fan', 'FAN18G1202' => 'fan', 'FAN19G0551' => 'fan', 'FAN21G3471' => 'fan', 'FAN23G2217' => 'fan', 'FAN25G3556' => 'fan', 'FAN26G2725' => 'fan', 'FAN28G1992' => 'fan', 'FvH4_1g24010' => 'fve', 'FvH4_3g20610' => 'fve', 'FvH4_5g11420' => 'fve', 'FvH4_6g13960' => 'fve', 'FvH4_7g32140' => 'fve', 'Glyma.03G082800' => 'gma', 'Glyma.04G214900' => 'gma', 'Glyma.04G233400' => 'gma', 'Glyma.05G189800' => 'gma', 'Glyma.05G220000' => 'gma', 'Glyma.06G131400' => 'gma', 'Glyma.06G151300' => 'gma', 'Glyma.06G247200' => 'gma', 'Glyma.08G026300' => 'gma', 'Glyma.08G147400' => 'gma', 'Glyma.08G358700' => 'gma', 'Glyma.12G150300' => 'gma', 'Glyma.12G222100' => 'gma', 'Glyma.13G279400' => 'gma', 'Glyma.18G178000' => 'gma', 'Glyma.18G250400' => 'gma', 'Gohir.1Z049512' => 'ghi', 'Gohir.A01G066100' => 'ghi', 'Gohir.A01G222800' => 'ghi', 'Gohir.A02G097000' => 'ghi', 'Gohir.A03G049000' => 'ghi', 'Gohir.A07G136400' => 'ghi', 'Gohir.A09G156600' => 'ghi', 'Gohir.A10G083600' => 'ghi', 'Gohir.A11G019200' => 'ghi', 'Gohir.A11G098700' => 'ghi', 'Gohir.A11G222800' => 'ghi', 'Gohir.A12G248200' => 'ghi', 'Gohir.A13G145000' => 'ghi', 'Gohir.D01G053400' => 'ghi', 'Gohir.D01G212300' => 'ghi', 'Gohir.D03G086800' => 'ghi', 'Gohir.D03G115800' => 'ghi', 'Gohir.D07G141800' => 'ghi', 'Gohir.D09G151900' => 'ghi', 'Gohir.D10G106000' => 'ghi', 'Gohir.D11G018900' => 'ghi', 'Gohir.D11G103300' => 'ghi', 'Gohir.D11G234200' => 'ghi', 'Gohir.D12G248900' => 'ghi', 'Gohir.D13G149800' => 'ghi', 'Gorai.001G153400' => 'gra', 'Gorai.002G073100' => 'gra', 'Gorai.002G258100' => 'gra', 'Gorai.003G065400' => 'gra', 'Gorai.003G075300' => 'gra', 'Gorai.003G122000' => 'gra', 'Gorai.006G173300' => 'gra', 'Gorai.007G020200' => 'gra', 'Gorai.007G110600' => 'gra', 'Gorai.008G267100' => 'gra', 'Gorai.011G115900' => 'gra', 'Gorai.013G167600' => 'gra', 'Gorai.N018300' => 'gra', 'GSVIVG01014389001' => 'vvi', 'GSVIVG01019618001' => 'vvi', 'GSVIVG01021954001' => 'vvi', 'GSVIVG01026540001' => 'vvi', 'GSVIVG01027183001' => 'vvi', 'GSVIVG01034183001' => 'vvi', 'GSVIVG01038588001' => 'vvi', 'HanXRQChr03g0083121' => 'han', 'HanXRQChr04g0124631' => 'han', 'HanXRQChr04g0124811' => 'han', 'HanXRQChr05g0136911' => 'han', 'HanXRQChr05g0156721' => 'han', 'HanXRQChr06g0166631' => 'han', 'HanXRQChr06g0176891' => 'han', 'HanXRQChr07g0206411' => 'han', 'HanXRQChr08g0225171' => 'han', 'HanXRQChr08g0234361' => 'han', 'HanXRQChr11g0328381' => 'han', 'HanXRQChr17g0534421' => 'han', 'Haze_00240' => 'cav', 'Haze_00243' => 'cav', 'Haze_08570' => 'cav', 'Haze_09130' => 'cav', 'Haze_09480' => 'cav', 'Haze_09484' => 'cav', 'Haze_20782' => 'cav', 'Haze_25131' => 'cav', 'Hma1.2p1_0397F.1_g143790' => 'hma', 'Hma1.2p1_0415F.1_g147970' => 'hma', 'Hma1.2p1_0440F.1_g153660' => 'hma', 'Hma1.2p1_0456F.1_g156420' => 'hma', 'Hma1.2p1_0540F.1_g174640' => 'hma', 'Hma1.2p1_0591F.1_g185150' => 'hma', 'HPP92_002583' => 'vpl', 'HPP92_003262' => 'vpl', 'HPP92_003265' => 'vpl', 'HPP92_005448' => 'vpl', 'HPP92_009307' => 'vpl', 'HPP92_014454' => 'vpl', 'HPP92_019160' => 'vpl', 'HPP92_020728' => 'vpl', 'Hund02222' => 'sun', 'Hund15142' => 'sun', 'Hund16723' => 'sun', 'Hund21020' => 'sun', 'Hund22954' => 'sun', 'Hund27181' => 'sun', 'Hund29006' => 'sun', 'Hund29007' => 'sun', 'Lalb_Chr00c34g0408501' => 'lal', 'Lalb_Chr00c34g0408531' => 'lal', 'Lalb_Chr01g0022501' => 'lal', 'Lalb_Chr05g0223871' => 'lal', 'Lalb_Chr08g0238511' => 'lal', 'Lalb_Chr08g0240061' => 'lal', 'Lalb_Chr09g0332071' => 'lal', 'Lalb_Chr11g0067021' => 'lal', 'Lalb_Chr11g0068311' => 'lal', 'Lalb_Chr12g0203251' => 'lal', 'Lalb_Chr12g0209591' => 'lal', 'Lalb_Chr20g0109711' => 'lal', 'Lalb_Chr23g0272541' => 'lal', 'Lalb_Chr25g0286561' => 'lal', 'Lj1A848T61' => 'lonja', 'Lj1C1022T12' => 'lonja', 'Lj1g0011160' => 'lja', 'Lj1g0012213' => 'lja', 'Lj1g0027467' => 'lja', 'Lj1P786T11' => 'lonja', 'Lj2C603T1' => 'lonja', 'Lj2C96G3' => 'lonja', 'Lj3A899T67' => 'lonja', 'Lj3C969T1' => 'lonja', 'Lj3g0010044' => 'lja', 'Lj3g0023521' => 'lja', 'Lj4A851T40' => 'lonja', 'Lj4g0005895' => 'lja', 'Lj8A202T41' => 'lonja', 'Lsat_1_v5_gn_2_136381' => 'lsa', 'Lsat_1_v5_gn_3_12220' => 'lsa', 'Lsat_1_v5_gn_4_115121' => 'lsa', 'Lsat_1_v5_gn_5_124560' => 'lsa', 'Lsat_1_v5_gn_5_154281' => 'lsa', 'Lsat_1_v5_gn_5_6560' => 'lsa', 'Lsat_1_v5_gn_6_82540' => 'lsa', 'Lsat_1_v5_gn_7_105380' => 'lsa', 'Lsat_1_v5_gn_8_5501' => 'lsa', 'Lsat_1_v5_gn_8_82740' => 'lsa', 'Lsat_1_v5_gn_9_116740' => 'lsa', 'Manes.01G039500' => 'mes', 'Manes.01G244100' => 'mes', 'Manes.02G005100' => 'mes', 'Manes.03G113400' => 'mes', 'Manes.05G020700' => 'mes', 'Manes.05G192200' => 'mes', 'Manes.08G081600' => 'mes', 'Manes.09G089100' => 'mes', 'Manes.12G152300' => 'mes', 'Manes.15G085300' => 'mes', 'Mapoly0051s0033' => 'mpo', 'MBI04_g35984_MAGBIO' => 'mbi', 'MBI12_g15040_MAGBIO' => 'mbi', 'MBI12_g43634_MAGBIO' => 'mbi', 'MBI15_g26846_MAGBIO' => 'mbi', 'MBI17_g03756_MAGBIO' => 'mbi', 'MCO05G033' => 'mco', 'MD01G1011600' => 'mdo', 'MD01G1224100' => 'mdo', 'MD03G1223700' => 'mdo', 'MD04G1127300' => 'mdo', 'MD06G1113900' => 'mdo', 'MD07G1294900' => 'mdo', 'MD11G1241600' => 'mdo', 'MD12G1140500' => 'mdo', 'MD14G1135100' => 'mdo', 'MD15G1338300' => 'mdo', 'MD15G1338400' => 'mdo', 'Medtr1g007740' => 'mtr', 'Medtr1g091053' => 'mtr', 'Medtr2g079740' => 'mtr', 'Medtr3g095780' => 'mtr', 'Medtr3g491920' => 'mtr', 'Medtr7g060420' => 'mtr', 'Medtr8g092890' => 'mtr', 'Medtr8g100005' => 'mtr', 'MELO3C003126.2' => 'cme', 'MELO3C005773.2' => 'cme', 'MELO3C005904.2' => 'cme', 'MELO3C008041.2' => 'cme', 'MELO3C016715.2' => 'cme', 'Migut.E00730' => 'egut', 'Migut.F00190' => 'egut', 'Migut.F01013' => 'egut', 'Migut.H00748' => 'egut', 'Migut.H01921' => 'egut', 'Migut.L01939' => 'egut', 'Migut.M00858' => 'egut', 'MSTRG.10262' => 'ama', 'MSTRG.12188' => 'ama', 'MSTRG.12920' => 'ama', 'MSTRG.13728' => 'ama', 'MSTRG.14367' => 'ama', 'MSTRG.19087' => 'ama', 'MSTRG.24860' => 'ama', 'MSTRG.2673' => 'ama', 'MSTRG.27010' => 'ama', 'MSTRG.44' => 'ama', 'MSTRG.8528' => 'ama', 'MSTRG.8637' => 'ama', 'Nitab4.5_0000015g0230' => 'nta', 'Nitab4.5_0000109g0330' => 'nta', 'Nitab4.5_0000207g0210' => 'nta', 'Nitab4.5_0000349g0160' => 'nta', 'Nitab4.5_0000527g0180' => 'nta', 'Nitab4.5_0000673g0060' => 'nta', 'Nitab4.5_0000761g0060' => 'nta', 'Nitab4.5_0001962g0070' => 'nta', 'Nitab4.5_0002728g0030' => 'nta', 'Nitab4.5_0002780g0050' => 'nta', 'Nitab4.5_0003769g0110' => 'nta', 'Nitab4.5_0004813g0050' => 'nta', 'Nitab4.5_0005326g0010' => 'nta', 'Nitab4.5_0005575g0030' => 'nta', 'Nitab4.5_0005814g0070' => 'nta', 'Nitab4.5_0006748g0010' => 'nta', 'Nitab4.5_0007601g0010' => 'nta', 'Nitab4.5_0008383g0020' => 'nta', 'Nitab4.5_0009340g0010' => 'nta', 'Nitab4.5_0022454g0010' => 'nta', 'Nn1g00332' => 'nnu', 'Nn1g04001' => 'nnu', 'Nn1g06165' => 'nnu', 'Nn1g06632' => 'nnu', 'Nn1g08455' => 'nnu', 'Nn3g18921' => 'nnu', 'Nn5g27781' => 'nnu', 'Nn5g28677' => 'nnu', 'Oeu002639.1' => 'oeu', 'Oeu007790.1' => 'oeu', 'Oeu009999.1' => 'oeu', 'Oeu010702.1' => 'oeu', 'Oeu011676.2' => 'oeu', 'Oeu019347.3' => 'oeu', 'Oeu023666.1' => 'oeu', 'Oeu024353.1' => 'oeu', 'Oeu030443.1' => 'oeu', 'Oeu030444.1' => 'oeu', 'Oeu030445.1' => 'oeu', 'Oeu030446.3' => 'oeu', 'Oeu031635.1' => 'oeu', 'Oeu037794.3' => 'oeu', 'Oeu041072.2' => 'oeu', 'Oeu041382.1' => 'oeu', 'Oeu047676.1' => 'oeu', 'Oeu049237.1' => 'oeu', 'Oeu058017.1' => 'oeu', 'Oeu061003.2' => 'oeu', 'Os02g0539900' => 'osa', 'Os02g0638900' => 'osa', 'Os03g0115400' => 'osa', 'Os04g0417800' => 'osa', 'Os04g0529400' => 'osa', 'Os04g0568400' => 'osa', 'Os04g0678300' => 'osa', 'Os11g0187100' => 'osa', 'Os12g0178633' => 'osa', 'Peaxi162Scf00012g02112' => 'pax', 'Peaxi162Scf00027g00311' => 'pax', 'Peaxi162Scf00074g00354' => 'pax', 'Peaxi162Scf00102g01877' => 'pax', 'Peaxi162Scf00165g01518' => 'pax', 'Peaxi162Scf00407g00417' => 'pax', 'Peaxi162Scf00618g00326' => 'pax', 'Peaxi162Scf00740g00234' => 'pax', 'Peaxi162Scf00998g00006' => 'pax', 'PGR004G0258' => 'pgr', 'PGR031G1677' => 'pgr', 'PGR042G1301' => 'pgr', 'PGR083G1486' => 'pgr', 'PGR119G0244' => 'pgr', 'PGSC0003DMG400005849' => 'stu', 'PGSC0003DMG400008842' => 'stu', 'PGSC0003DMG400012125' => 'stu', 'PGSC0003DMG400018521' => 'stu', 'PGSC0003DMG400019207' => 'stu', 'PGSC0003DMG400019595' => 'stu', 'PGSC0003DMG400025006' => 'stu', 'PGSC0003DMG400025559' => 'stu', 'PGSC0003DMG401012456' => 'stu', 'PGSC0003DMG402012456' => 'stu', 'Phvul.002G270400' => 'pvu', 'Phvul.002G301700' => 'pvu', 'Phvul.005G083800' => 'pvu', 'Phvul.008G100100' => 'pvu', 'Phvul.009G047400' => 'pvu', 'Phvul.009G148300' => 'pvu', 'Phvul.010G013300' => 'pvu', 'Phvul.011G149100' => 'pvu', 'Potri.001G086600' => 'ptr', 'Potri.001G403400' => 'ptr', 'Potri.002G174100' => 'ptr', 'Potri.003G144400' => 'ptr', 'Potri.005G057600' => 'ptr', 'Potri.006G084600' => 'ptr', 'Potri.007G110500' => 'ptr', 'Potri.011G122500' => 'ptr', 'Potri.012G018200' => 'ptr', 'Potri.015G009700' => 'ptr', 'Pp3c10_15710' => 'ppa', 'Pp3c12_17730' => 'ppa', 'Pp3c3_18790' => 'ppa', 'Pp3c3_26050' => 'ppa', 'Pp3c4_14370' => 'ppa', 'PRCOL_00002973' => 'pco', 'Prupe.2G314500' => 'ppe', 'Prupe.4G185800' => 'ppe', 'Prupe.5G126700' => 'ppe', 'Prupe.6G159500' => 'ppe', 'Prupe.6G253900' => 'ppe', 'Psat0s2506g0080' => 'psa', 'Psat3g141360' => 'psa', 'Psat5g062960' => 'psa', 'Psat5g075520' => 'psa', 'Psat5g245200' => 'psa', 'Psat6g035840' => 'psa', 'Psat6g243080' => 'psa', 'Psat7g023000' => 'psa', 'Psat7g047440' => 'psa', 'Psat7g190960' => 'psa', 'PSO017G5762' => 'pso', 'PSO017G5891' => 'pso', 'PSO063G5814' => 'pso', 'PSO063G6970' => 'pso', 'PSO135G0640' => 'pso', 'PSO170G5775' => 'pso', 'PSO198G0018' => 'pso', 'PSO210G0380' => 'pso', 'PSO384G4890' => 'pso', 'PSO541G2496' => 'pso', 'PSO675G1443' => 'pso', 'PSO832G3295' => 'pso', 'QL02p028509' => 'qlo', 'QL02p028801' => 'qlo', 'QL06p029651' => 'qlo', 'QL07p048141' => 'qlo', 'QL08p019707' => 'qlo', 'QL09p007810' => 'qlo', 'RcHm_v2.0_Chr1g0381741' => 'rch', 'RcHm_v2.0_Chr2g0120151' => 'rch', 'RcHm_v2.0_Chr3g0466781' => 'rch', 'RcHm_v2.0_Chr5g0034631' => 'rch', 'RcHm_v2.0_Chr7g0186451' => 'rch', 'Rhsim02G0249200' => 'rsi', 'Rhsim05G0191800' => 'rsi', 'Rhsim06G0196200' => 'rsi', 'Rhsim07G0002600' => 'rsi', 'Rhsim09G0207100' => 'rsi', 'Rhsim10G0138400' => 'rsi', 'Sabra01G0062700' => 'sbr', 'Sabra02G0139300' => 'sbr', 'Sabra03G0105000' => 'sbr', 'Sabra05G0049500' => 'sbr', 'Sabra06G0064200' => 'sbr', 'Sabra07G0090400' => 'sbr', 'Sabra12G0014300' => 'sbr', 'Sabra15G0007700' => 'sbr', 'Sabra16G0265000' => 'sbr', 'SalBow2G0133' => 'sbo', 'SalBow3G0209' => 'sbo', 'SalBow4G1581' => 'sbo', 'SalBow4G1912' => 'sbo', 'SalBow7G0924' => 'sbo', 'Sc01g0002460' => 'sci', 'Sc01g0004270' => 'sci', 'Sc01g0004280' => 'sci', 'Sc03g0009760' => 'sci', 'Sc03g0009830' => 'sci', 'Sc13g0010020' => 'sci', 'Sc16g0003950' => 'sci', 'Sc16g0006910' => 'sci', 'Sc19g0000780' => 'sci', 'Sc22g0004780' => 'sci', 'Sc22g0004790' => 'sci', 'Sc22g0004800' => 'sci', 'Sed0000658' => 'sed', 'Sed0002369' => 'sed', 'Sed0004227' => 'sed', 'Sed0012457' => 'sed', 'Sed0015562' => 'sed', 'Sed0016673' => 'sed', 'Sed0020444' => 'sed', 'Sed0024995' => 'sed', 'Sed0026840' => 'sed', 'Sed0027522' => 'sed', 'SEGI_22101' => 'sgi', 'SEGI_29325' => 'sgi', 'SGA_v2.0_scaffold104G30281' => 'sas', 'SGA_v2.0_scaffold125G33705' => 'sas', 'SGA_v2.0_scaffold137G35148' => 'sas', 'SGA_v2.0_scaffold192G40521' => 'sas', 'SGA_v2.0_scaffold314G48357' => 'sas', 'SGA_v2.0_scaffold77G25224' => 'sas', 'SGA_v2.0_scaffold94G28589' => 'sas', 'SGA_v2.0_scaffold9G04938' => 'sas', 'SHI12667' => 'shi', 'SMO014G0046' => 'smo', 'SMO164G0095' => 'smo', 'Solyc03g082870.4' => 'sly', 'Solyc06g052070.3' => 'sly', 'Solyc07g063330.4' => 'sly', 'Solyc08g008490.4' => 'sly', 'Solyc08g077620.1' => 'sly', 'Solyc08g082900.4' => 'sly', 'Solyc09g010720.3' => 'sly', 'Solyc10g006890.4' => 'sly', 'Solyc10g086430.3' => 'sly', 'Solyc11g005710.2' => 'sly', 'Sopen03g022690' => 'spe', 'Sopen06g018120' => 'spe', 'Sopen07g031500' => 'spe', 'Sopen08g004340' => 'spe', 'Sopen08g031130' => 'spe', 'Sopen09g005430' => 'spe', 'Sopen10g002800' => 'spe', 'Sopen10g035810' => 'spe', 'Sopen11g001670' => 'spe', 'Sp1g35780' => 'spa', 'Sp2g00110' => 'spa', 'Sp2g23000' => 'spa', 'Sp3g13720' => 'spa', 'Sp4g20040' => 'spa', 'Sp6g15640' => 'spa', 'Sp6g16260' => 'spa', 'Sp7g00110' => 'spa', 'Sp7g08760' => 'spa', 'TAR374G1617' => 'tar', 'TAR375G0740' => 'tar', 'TAR376G0101' => 'tar', 'TAR627G0137' => 'tar', 'TAR627G0426' => 'tar', 'TAR628G0155' => 'tar', 'TAR628G0969' => 'tar', 'TAR629G0651' => 'tar', 'TAR629G2004' => 'tar', 'TAR629G2932' => 'tar', 'TAR636G2062' => 'tar', 'TAR688G0002' => 'tar', 'THA.LOC104799960' => 'tha', 'THA.LOC104806565' => 'tha', 'THA.LOC104809316' => 'tha', 'THA.LOC104810485' => 'tha', 'THA.LOC104811906' => 'tha', 'THA.LOC104814935' => 'tha', 'THA.LOC104816276' => 'tha', 'THA.LOC104817380' => 'tha', 'THA.LOC104820461' => 'tha', 'THA.LOC104823618' => 'tha', 'THA.LOC104825157' => 'tha', 'Thecc.01G125000' => 'tca', 'Thecc.01G339300' => 'tca', 'Thecc.03G202600' => 'tca', 'Thecc.03G224500' => 'tca', 'Thecc.05G040700' => 'tca', 'Thecc.07G076600' => 'tca', 'Thhalv10003733m.g' => 'esa', 'Thhalv10011035m.g' => 'esa', 'Thhalv10011347m.g' => 'esa', 'Thhalv10012625m.g' => 'esa', 'Thhalv10012916m.g' => 'esa', 'Thhalv10016206m.g' => 'esa', 'Thhalv10020024m.g' => 'esa', 'TPR.G23299' => 'tpr', 'TPR.G24067' => 'tpr', 'TPR.G24544' => 'tpr', 'TPR.G25469' => 'tpr', 'TPR.G27628' => 'tpr', 'TPR.G30981' => 'tpr', 'TPR.G33617' => 'tpr', 'TPR.G35' => 'tpr', 'TPR.G38979' => 'tpr', 'TWI14G0132' => 'twi', 'TWI38G0435' => 'twi', 'TWI38G2216' => 'twi', 'TWI39G0544' => 'twi', 'TWI53G1942' => 'twi', 'TWI60G1436' => 'twi', 'TWI79G1379' => 'twi', 'unitig_0.g2261' => 'ugi', 'unitig_26.g9537' => 'ugi', 'unitig_748.g7289' => 'ugi', 'unitig_749.g13523' => 'ugi', 'unitig_899.g15230' => 'ugi', 'unitig_92.g28247' => 'ugi', 'vmacro10135' => 'vma', 'vmacro11521' => 'vma', 'vmacro11836' => 'vma', 'vmacro12846' => 'vma', 'vmacro20145' => 'vma', 'VMungo0251G2161' => 'vmu', 'VMungo0251G3186' => 'vmu', 'VMungo0331G1565' => 'vmu', 'VMungo1080G0025' => 'vmu', 'VMungo1127G1686' => 'vmu', 'VMungo1127G2041' => 'vmu', 'VMungo1127G2247' => 'vmu', 'VMungo1309G0722' => 'vmu', 'VMungo1309G1586' => 'vmu', 'VMungo1309G2757' => 'vmu', 'VMungo1383G1578' => 'vmu', 'Zm00001eb001040' => 'zma', 'Zm00001eb015580' => 'zma', 'Zm00001eb066110' => 'zma', 'Zm00001eb073740' => 'zma', 'Zm00001eb075850' => 'zma', 'Zm00001eb083450' => 'zma', 'Zm00001eb099060' => 'zma', 'Zm00001eb125800' => 'zma', 'Zm00001eb185690' => 'zma', 'Zm00001eb201360' => 'zma', 'Zm00001eb243200' => 'zma', 'Zm00001eb248440' => 'zma', 'Zm00001eb297920' => 'zma', 'Zm00001eb333770' => 'zma', 'Zm00001eb341300' => 'zma', 'Zm00001eb408270' => 'zma', 'Zm00001eb422140' => 'zma', 'Zm00001eb427140' => 'zma', 'Zm00001eb433820' => 'zma' ) $gf_id = 'HOM05D000645' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000645' ) $data_identifier = 'HOM05D000645' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 9, 'aly' => (int) 14, 'aox' => (int) 5, 'arhy' => (int) 19, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 1, 'cansat' => (int) 5, 'chi' => (int) 9, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 14, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 15, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 25, 'gra' => (int) 13, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 8, 'lal' => (int) 14, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 11, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 20, 'nnu' => (int) 8, 'oeu' => (int) 20, 'osa' => (int) 9, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 5, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 12, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 9, 'twi' => (int) 7, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433820' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1